WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C04G6.3.1 Sequence Name  C04G6.3.1
Length (nt)  4713   Chromosome Location  II: 5083848-5091690
Chromosome . Primary Identifier  II Chromosome Location . Start  5083848
Chromosome Location . End  5091690 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C04G6.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004040 pld-1 C04G6.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C04G6.3 C04G6.3 4284   II: 5084223-5084323

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C04G6.3.1 5083848 5091690 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon49282   476   II: 5083848-5084323 Caenorhabditis elegans
Exon49283   124   II: 5084482-5084605 Caenorhabditis elegans
Exon49284   141   II: 5084980-5085120 Caenorhabditis elegans
Exon49285   126   II: 5085448-5085573 Caenorhabditis elegans
Exon49288   93   II: 5086118-5086210 Caenorhabditis elegans
Exon49289   232   II: 5086400-5086631 Caenorhabditis elegans
Exon49290   107   II: 5086682-5086788 Caenorhabditis elegans
Exon49291   195   II: 5086835-5087029 Caenorhabditis elegans
Exon49292   134   II: 5087658-5087791 Caenorhabditis elegans
Exon49293   1592   II: 5087845-5089436 Caenorhabditis elegans
Exon49294   156   II: 5089488-5089643 Caenorhabditis elegans
Exon49295   506   II: 5089767-5090272 Caenorhabditis elegans
Exon49296   115   II: 5090321-5090435 Caenorhabditis elegans
Exon49297   129   II: 5090701-5090829 Caenorhabditis elegans
Exon49298   145   II: 5090878-5091022 Caenorhabditis elegans
Exon49299   127   II: 5091069-5091195 Caenorhabditis elegans
Exon49301   173   II: 5091241-5091413 Caenorhabditis elegans
Exon49302   142   II: 5091549-5091690 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C04G6.3.1 5083848 5091690 -1

1 Sequence

Length
4713

1 Sequence Ontology Term

Identifier Name Description
transcript