WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09D8.1i.1 Sequence Name  C09D8.1i.1
Length (nt)  6675   Chromosome Location  II: 10975569-11011782
Chromosome . Primary Identifier  II Chromosome Location . Start  10975569
Chromosome Location . End  11011782 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09D8.1i.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004215 ptp-3 C09D8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09D8.1i C09D8.1i 6675   II: 10975569-10975836

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C09D8.1i.1 10975569 11011782 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

28 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon67519   268   II: 10975569-10975836 Caenorhabditis elegans
Exon67523   142   II: 10976186-10976327 Caenorhabditis elegans
Exon67529   241   II: 10976373-10976613 Caenorhabditis elegans
Exon67535   214   II: 10977017-10977230 Caenorhabditis elegans
Exon67549   135   II: 10983267-10983401 Caenorhabditis elegans
Exon67559   141   II: 10983794-10983934 Caenorhabditis elegans
Exon67569   124   II: 10983998-10984121 Caenorhabditis elegans
Exon67584   85   II: 10984385-10984469 Caenorhabditis elegans
Exon67594   246   II: 10984517-10984762 Caenorhabditis elegans
Exon67604   142   II: 10985022-10985163 Caenorhabditis elegans
Exon67614   208   II: 10985213-10985420 Caenorhabditis elegans
Exon67624   71   II: 10985485-10985555 Caenorhabditis elegans
Exon67634   360   II: 10985677-10986036 Caenorhabditis elegans
Exon67655   50   II: 10993895-10993944 Caenorhabditis elegans
Exon67666   265   II: 10994145-10994409 Caenorhabditis elegans
Exon67677   213   II: 10995024-10995236 Caenorhabditis elegans
Exon67688   143   II: 10995310-10995452 Caenorhabditis elegans
Exon67699   111   II: 10996164-10996274 Caenorhabditis elegans
Exon67711   133   II: 10998998-10999130 Caenorhabditis elegans
Exon67727   86   II: 11006751-11006836 Caenorhabditis elegans
Exon67740   177   II: 11007016-11007192 Caenorhabditis elegans
Exon67755   516   II: 11007310-11007825 Caenorhabditis elegans
Exon67769   276   II: 11007889-11008164 Caenorhabditis elegans
Exon67783   99   II: 11009181-11009279 Caenorhabditis elegans
Exon67797   1619   II: 11009368-11010986 Caenorhabditis elegans
Exon67811   253   II: 11011040-11011292 Caenorhabditis elegans
Exon67825   246   II: 11011373-11011618 Caenorhabditis elegans
Exon67834   111   II: 11011672-11011782 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C09D8.1i.1 10975569 11011782 1

1 Sequence

Length
6675

1 Sequence Ontology Term

Identifier Name Description
transcript