WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm. Description  Top 300 transcripts enriched in B cell, F cell, K cell, K' cell, U cell, Y cell, rect_D, rect_VL, rect_VR according to single cell RNAseq.
Primary Identifier  WBPaper00061340:Rectal_cell
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9 Anatomy Terms

Definition Name Synonym Primary Identifier
Rectal cell, postembryonic blast cell in male B cell lineage name: ABprppppapa WBbt:0003825
Rectal cell, blast cell in male F cell lineage name: ABplppppapp WBbt:0004799
Rectal epithelial cells, adjacent to intestino-rectal valve, have microvilli rect_D lineage name: ABplpappppp WBbt:0004788
Rectal epithelial cells, adjacent to intestino-rectal valve, have microvilli rect_VL lineage name: ABplppppaap WBbt:0004787
Rectal epithelial cells, adjacent to intestino-rectal valve, have microvilli rect_VR lineage name: ABprppppaap WBbt:0004776
Rectal cell, postembryonic blast cell in male U cell lineage name: ABplppppapa WBbt:0004942
Rectal cell, postembryonic blast cell K cell lineage name: ABplpapppaa WBbt:0004499
Rectal cell K' cell lineage name: ABplpapppap WBbt:0004497
Rectal cell at hatching, becomes PDA in hermaphrodite, postembryonic blast cell in male Y cell lineage name: ABprpppaaaa WBbt:0004578

300 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000081 ads-1 Y50D7A.7 Caenorhabditis elegans
WBGene00000090 age-1 B0334.8 Caenorhabditis elegans
WBGene00000097 aip-1 F58E10.4 Caenorhabditis elegans
WBGene00000123 ama-1 F36A4.7 Caenorhabditis elegans
WBGene00000147 aph-1 VF36H2L.1 Caenorhabditis elegans
WBGene00000197 aars-2 F28H1.3 Caenorhabditis elegans
WBGene00000238 bar-1 C54D1.6 Caenorhabditis elegans
WBGene00000279 cah-1 F54D8.4 Caenorhabditis elegans
WBGene00000288 cal-4 T07G12.1 Caenorhabditis elegans
WBGene00000386 cdc-25.1 K06A5.7 Caenorhabditis elegans
WBGene00000397 cdh-5 F08B4.2 Caenorhabditis elegans
WBGene00000401 cdh-9 F59C12.1 Caenorhabditis elegans
WBGene00000403 casy-1 B0034.3 Caenorhabditis elegans
WBGene00000611 col-34 F36A4.10 Caenorhabditis elegans
WBGene00000692 col-118 T11B7.3 Caenorhabditis elegans
WBGene00000764 coq-4 T03F1.2 Caenorhabditis elegans
WBGene00000780 cpn-4 F49D11.8 Caenorhabditis elegans
WBGene00000838 cul-3 Y108G3AL.1 Caenorhabditis elegans
WBGene00000870 cyd-1 Y38F1A.5 Caenorhabditis elegans
WBGene00000874 cyk-3 ZK328.1 Caenorhabditis elegans
WBGene00000902 daf-6 F31F6.5 Caenorhabditis elegans
WBGene00001227 eif-3.D R08D7.3 Caenorhabditis elegans
WBGene00001311 end-3 F58E10.5 Caenorhabditis elegans
WBGene00001425 fis-2 F13B9.8 Caenorhabditis elegans
WBGene00001454 flp-11 K02G10.4 Caenorhabditis elegans
WBGene00001491 frm-4 C24A11.8 Caenorhabditis elegans
WBGene00001492 frm-5.1 Y38C1AB.8 Caenorhabditis elegans
WBGene00001645 gly-20 C03E10.4 Caenorhabditis elegans
WBGene00001651 gon-2 T01H8.5 Caenorhabditis elegans
WBGene00001660 gop-1 C34E10.3 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The second stage larva. At 25 Centigrade, it ranges 25.5-32.5 hours after fertilization, 11.5-18.5 hours after hatch. L2 larva Ce WBls:0000027

0 Processes

0 Regulated By Gene

0 Regulated By Molecule