WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  DEGseq and GFOLD were used to analyze miRNAs expression. Authors chose miRNAs which had more than two-fold difference in expression (P < 0.001, q < 0.01 of Storey) from DEGseq, and miRNAs which had more than two-fold difference in expression (GFOLD score > 0 for up-regulation and GFOLD score < 0 for down-regulation) from GFOLD outcomes. Then authors obtained the intersection of up-regulated miRNAs and down-regulated miRNAs for each stage from the chosen miRNAs, respectively. Description  miRNA with increased expression in prg-1(wm161) comparing to in N2.
Primary Identifier  WBPaper00045316:miRNA_prg-1_upregulated_embryo

0 Anatomy Terms

26 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003264 mir-36 Y62F5A.3 Caenorhabditis elegans
WBGene00003265 mir-37 Y62F5A.4 Caenorhabditis elegans
WBGene00003300 mir-72 F53G2.9 Caenorhabditis elegans
WBGene00077723 mir-1830 B0286.7 Caenorhabditis elegans
WBGene00003267 mir-39 Y62F5A.6 Caenorhabditis elegans
WBGene00003268 mir-40 Y62F5A.7 Caenorhabditis elegans
WBGene00003273 mir-45 ZK930.11 Caenorhabditis elegans
WBGene00003272 mir-44 ZK930.10 Caenorhabditis elegans
WBGene00003295 mir-67 EGAP1.2 Caenorhabditis elegans
WBGene00077725 mir-1832.1 C18D11.11 Caenorhabditis elegans
WBGene00194824 mir-2209.1 Y55F3AM.18 Caenorhabditis elegans
WBGene00003337 mir-243 R08C7.14 Caenorhabditis elegans
WBGene00003321 mir-228 T12E12.7 Caenorhabditis elegans
WBGene00003311 mir-83 C06A6.6 Caenorhabditis elegans
WBGene00219221 mir-5551 C28D4.16 Caenorhabditis elegans
WBGene00003325 mir-232 F13H10.7 Caenorhabditis elegans
WBGene00003279 mir-51 F36H1.7 Caenorhabditis elegans
WBGene00003298 mir-70 T10H9.7 Caenorhabditis elegans
WBGene00045354 mir-796 C14E2.8 Caenorhabditis elegans
WBGene00050924 mir-1018 Y59E1B.3 Caenorhabditis elegans
WBGene00003342 mir-248 AH9.5 Caenorhabditis elegans
WBGene00003301 mir-73 T24D8.9 Caenorhabditis elegans
WBGene00077721 mir-1022 K10C2.9 Caenorhabditis elegans
WBGene00003345 mir-251 F59F3.7 Caenorhabditis elegans
WBGene00003282 mir-54 F09A5.5 Caenorhabditis elegans
WBGene00003291 mir-63 C16H3.5 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The whole period of embryogenesis in the nematode Caenorhabditis elegans, from the formation of an egg until hatching. embryo Ce WBls:0000003

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004178 prg-1 D2030.6 Caenorhabditis elegans

0 Regulated By Molecule