WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  DEGseq and GFOLD were used to analyze miRNAs expression. Authors chose miRNAs which had more than two-fold difference in expression (P < 0.001, q < 0.01 of Storey) from DEGseq, and miRNAs which had more than two-fold difference in expression (GFOLD score > 0 for up-regulation and GFOLD score < 0 for down-regulation) from GFOLD outcomes. Then authors obtained the intersection of up-regulated miRNAs and down-regulated miRNAs for each stage from the chosen miRNAs, respectively. Description  miRNA with increased expression in prg-1(wm161) comparing to in N2.
Primary Identifier  WBPaper00045316:miRNA_prg-1_upregulated_L1

0 Anatomy Terms

26 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003039 mir-48 F56A12.3 Caenorhabditis elegans
WBGene00003262 mir-34 Y41G9A.7 Caenorhabditis elegans
WBGene00003265 mir-37 Y62F5A.4 Caenorhabditis elegans
WBGene00003335 mir-241 F56A12.4 Caenorhabditis elegans
WBGene00003260 mir-1 T09B4.11 Caenorhabditis elegans
WBGene00045329 mir-795 F33E2.9 Caenorhabditis elegans
WBGene00003300 mir-72 F53G2.9 Caenorhabditis elegans
WBGene00077723 mir-1830 B0286.7 Caenorhabditis elegans
WBGene00003273 mir-45 ZK930.11 Caenorhabditis elegans
WBGene00003272 mir-44 ZK930.10 Caenorhabditis elegans
WBGene00077725 mir-1832.1 C18D11.11 Caenorhabditis elegans
WBGene00219223 mir-4814 W06F12.9 Caenorhabditis elegans
WBGene00219270 mir-5550 T07A9.17 Caenorhabditis elegans
WBGene00194824 mir-2209.1 Y55F3AM.18 Caenorhabditis elegans
WBGene00003337 mir-243 R08C7.14 Caenorhabditis elegans
WBGene00003311 mir-83 C06A6.6 Caenorhabditis elegans
WBGene00219221 mir-5551 C28D4.16 Caenorhabditis elegans
WBGene00003325 mir-232 F13H10.7 Caenorhabditis elegans
WBGene00045354 mir-796 C14E2.8 Caenorhabditis elegans
WBGene00003301 mir-73 T24D8.9 Caenorhabditis elegans
WBGene00003323 mir-230 F46G11.5 Caenorhabditis elegans
WBGene00077721 mir-1022 K10C2.9 Caenorhabditis elegans
WBGene00003348 mir-254 ZK455.9 Caenorhabditis elegans
WBGene00003282 mir-54 F09A5.5 Caenorhabditis elegans
WBGene00077716 mir-1819 R11.5 Caenorhabditis elegans
WBGene00003291 mir-63 C16H3.5 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004178 prg-1 D2030.6 Caenorhabditis elegans

0 Regulated By Molecule