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WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Pattern :

Pattern  In males, dmd-3::YFP was expressed in a number of sexually dimorphic or sex-specific cells, including the tail tip, hindgut, B lineage, ray RnA neurons and somatic gonad. By contrast, hermaphrodites exhibited strong dmd-3::YFP expression only in the anchor cell. Non-sex-specific expression of these reporters was weak, occurring primarily in the body hypodermis. In addition, expression in phasmid neurons of both sexes was sometimes seen during L3 and L4. In hyp8 to 11, dmd-3::YFP expression was male specific and coincided with morphogenesis. Tail tip expression initiated in early-mid L4 males, first in hyp8, hyp9 and hyp11, and shortly thereafter in hyp10. Authors occasionally observed weak expression in hyp9 in late L3 males. Expression levels peaked during tail tip retraction and decreased rapidly upon its completion. dmd-3 was also expressed in hyp13. Importantly, dmd-3::YFP was not expressed in hermaphrodite hyp8 to 11 at any stage. Primary Identifier  Expr8158
Remark  Lineage expression: B lineage. New Anatomy_term: hyp13. Picture: Figure 2, Figure 4B.
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29 Anatomy Terms

Definition Name Synonym Primary Identifier
A chain of very large cuboidal cells forming a wide central lumen in which food arrives from the posterior pharynx, is digested, and from which waste products proceed to the rectum. Intestinal rings form in groups of two and four cells surrounding the common lumen; thus the epithelium is only one cell deep at any point, with neighboring cells firmly secured to their neighbors by apical adherens junctions. These cells have very large nuclei and many large vacuoles, yolk granules, and other inclusions; the latter increase in number and electron density as the animal ages. intestine gut WBbt:0005772
male gonad cell, leads gonad during morphogenesis and initiates union with cloaca linker cell gon_male_link WBbt:0005062
Tail ventral hypodermis hyp10 lineage name: ABplppppppp WBbt:0004378
Tail ventral hypodermis, 8th hypodermis cell hyp8   WBbt:0004381
Tail ventral hypodermis, 9th hypodermis cell hyp9   WBbt:0004380
Tail dorsal hypodermis hyp11 lineage name: Cpappv WBbt:0004377
neuron of phasmid sensillum phasmid neuron   WBbt:0006753
anchor cell, induces vulva, part of hermaphrodite gonad. anchor cell AC WBbt:0004522
organ producing either sperm or ova. gonad   WBbt:0005175
Post-embryonic cell of pedigree V6L.pppapaaa, male sensory rays, neuron, striated rootlet. R4AL lineage name: V6L.pppapaaa WBbt:0004030
Post-embryonic cell of pedigree V6R.pppapaaa, male sensory rays, neuron, striated rootlet. R4AR lineage name: V6R.pppapaaa WBbt:0004029
Post-embryonic cell of pedigree V6L.papapaaa, male sensory rays, neuron, striated rootlet. R2AL lineage name: R2L.aaa WBbt:0004042
Post-embryonic cell of pedigree V6R.papapaaa, male sensory rays, neuron, striated rootlet. R2AR lineage name: R2R.aaa WBbt:0004041
Rectal cell, postembryonic blast cell in male B cell lineage name: ABprppppapa WBbt:0003825
Post-embryonic cell of pedigree TL.appaaaaa, male sensory rays, neuron, striated rootlet. R8AL lineage name: TL.appaaaaa WBbt:0003994
Male sensory rays, neuron, striated rootlet R8AR lineage name: TR.appaaaaa WBbt:0003992
Post-embryonic cell of pedigree V6L.ppppaaaa, male sensory rays, neuron, striated rootlet. R5AL R5L.aaa WBbt:0004024
Post-embryonic cell of pedigree V6R.ppppaaaa, male sensory rays, neuron, striated rootlet. R5AR lineage name: V6R.ppppaaaa WBbt:0004023
Post-embryonic cell of pedigree V6L.papppaaa, male sensory rays, neuron, striated rootlet. R3AL lineage name: R3L.aaa WBbt:0004036
Post-embryonic cell of pedigree V6R.papppaaa, male sensory rays, neuron, striated rootlet. R3AR lineage name: V6R.papppaaa WBbt:0004035
Post-embryonic cell of pedigree V6L.pppppaaa, male sensory rays, neuron, striated rootlet. R6AL lineage name: V6L.pppppaaa WBbt:0004018
Post-embryonic cell of pedigree V6R.pppppaaa, male sensory rays, neuron, striated rootlet. R6AR lineage name: V6R.pppppaaa WBbt:0004016
Post-embryonic cell of pedigree V5L.pppppaaa, male sensory rays, neuron, striated rootlet. R1AL lineage name: R1L.aaa WBbt:0004052
Post-embryonic cell of pedigree V5R.pppppaaa, male sensory rays, neuron, striated rootlet. R1AR lineage name: R1R.aaa WBbt:0004050
Male sensory rays, neuron, striated rootlet R9AL lineage name: TL.appapaaa WBbt:0003971
Post-embryonic cell of pedigree TL.apappaaa, male sensory rays, neuron, striated rootlet. R7AL lineage name: TL.apappaaa WBbt:0004006
Male sensory rays, neuron, striated rootlet R9AR lineage name: TR.appapaaa WBbt:0003970
Male sensory rays, neuron, striated rootlet R7AR lineage name: TR.apappaaa WBbt:0004002
male-specific, bi-nucleated hypodermal cell formed by the sisters of T. hyp13 lineage name: ABplappppa WBbt:0007853

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012832 dmd-3 Y43F8C.10 Caenorhabditis elegans

3 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038
  The stage that begins when a C.elegans individual is fully-developed and has reached maturity. adult Ce WBls:0000041
  The third stage larva. At 25 Centigrade, it ranges 32.5-40 hours after fertilization, 18.5-26 hours after hatch. L3 larva Ce WBls:0000035