WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Pattern :

Pattern  A 2.8 kb promoter of cysl-1 drove GFP expression mainly in the nervous system of adult hermaphrodites. The cysl-1::GFP expression pattern was similar for the transcriptional and translational reporters. GFP was observed in subsets of pharyngeal neurons, amphid sensory neurons and tail neurons, starting from late embryonic stages and persisting into adults. We identified GFP-positive cells as the AVM sensory neuron, the BDU interneurons, and the pharyngeal I1 interneurons and M2 motor neurons, based on their characteristic processes and nuclear positions. GFP in body wall muscles, hypoderm, and intestine was present in larvae but only weakly detectable in adult animals. Primary Identifier  Expr9999
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29 Anatomy Terms

Definition Name Synonym Primary Identifier
neuron with cell body associated with the ventral nerve cord. ventral cord neuron ventral cord motoneuron WBbt:0005300
A chain of very large cuboidal cells forming a wide central lumen in which food arrives from the posterior pharynx, is digested, and from which waste products proceed to the rectum. Intestinal rings form in groups of two and four cells surrounding the common lumen; thus the epithelium is only one cell deep at any point, with neighboring cells firmly secured to their neighbors by apical adherens junctions. These cells have very large nuclei and many large vacuoles, yolk granules, and other inclusions; the latter increase in number and electron density as the animal ages. intestine gut WBbt:0005772
Longitudinal bands of muscle cells surrounding animal body, with one band running in each quadrant of the body, regulated contraction and relaxation of these muscles cause locomotion. body wall musculature body muscle WBbt:0005813
Epidermal layer. hypodermis epidermis WBbt:0005733
Pharyngeal sensory-motorneurons m3L lineage name: ABaraapappp WBbt:0004471
Pharyngeal sensory-motorneurons m3R lineage name: ABaraappppp WBbt:0004469
a single, H-shaped cell which lies just above the anus and connects the roof of the anal canal to the dorsal bodywall; its contractions act to increase the size of the anal opening by lifting the roof of the rectum and hence facilitate expulsion of intestinal contents. anal depressor muscle dilator muscle WBbt:0004292
neuron with its cell body situated in the tail, posterior to rectum. tail neuron   WBbt:0006759
Neuron class of one pharyngeal interneuron, posterior sensory. I5 neuron I5 WBbt:0004740
neuron of the pharyngeal nervous system. pharyngeal neuron   WBbt:0005439
neuron of the amphid sensillum amphid neuron amphid sensory neuron WBbt:0005394
Pharyngeal interneurons: ant sensory, input from RIP I1L lineage name: ABalpapppaa WBbt:0004746
Pharyngeal interneurons: ant sensory, input from RIP I1R lineage name: ABarapappaa WBbt:0004745
ganglion in the head. head ganglion   WBbt:0005135
Neuron class of one male-specific sensory neuron associated with hook sensillum, receptor anterior to cloaca in male. HOB lineage name: P10.ppap WBbt:0004761
neuron in the male ray. ray neuron   WBbt:0006971
Pharyngeal motorneurons m2L lineage name: ABaraapappa WBbt:0004487
Pharyngeal motorneurons m2R lineage name: ABaraappppa WBbt:0004473
Neuron class of one pharyngeal interneuron. I4 neuron I4 WBbt:0004741
  gubernacular retractor muscle   WBbt:0005825
  gubernacular erector muscle   WBbt:0005824
specialized muscle in the male. anterior oblique muscle   WBbt:0005822
Neuron, ending is sheath of postcloacal sensilla in male PCBL lineage name: Y.plpa WBbt:0004406
Neuron, ending is sheath of postcloacal sensilla in male PCBR lineage name: Y.prpa WBbt:0004405
Male specific sensory /motor neuron, innervates spicule protractor muscle SPCL lineage name: B.alpaap WBbt:0004968
Male specific sensory /motor neuron, innervates spicule protractor muscle SPCR lineage name: B.arpaap WBbt:0004967
Sensory neuron of postcloacal sensilla in male PCAL lineage name: Y.plppd WBbt:0004408
Sensory neuron of postcloacal sensilla in male PCAR lineage name: Y.prppd WBbt:0004407
Neuron class of one male-specific sensory neuron associated with hook sensillum, receptor anterior to cloaca in male. HOA lineage name: P10.pppa WBbt:0004762

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007653 cysl-1 C17G1.7 Caenorhabditis elegans

6 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The stage that begins when a C.elegans individual is fully-developed and has reached maturity. adult Ce WBls:0000041
  The third stage larva. At 25 Centigrade, it ranges 32.5-40 hours after fertilization, 18.5-26 hours after hatch. L3 larva Ce WBls:0000035
  The second stage larva. At 25 Centigrade, it ranges 25.5-32.5 hours after fertilization, 11.5-18.5 hours after hatch. L2 larva Ce WBls:0000027
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024
  The whole period of embryogenesis in the nematode Caenorhabditis elegans, from the formation of an egg until hatching. embryo Ce WBls:0000003