WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Pattern :

Pattern  Expression in the alimentary canal: Strong and consistent expression in anterior arcades, posterior arcades. Weak or rare expression in pm2, pm3, pm4, pm5, pm6, pm7, pm8, mc1, g1, g2, rectal gland cells, rectal epithelial cells. Expression in the nervous system: Phsh, AVK, DVC (early larva), PVR, SIB (early larva), URB, I3. Expression in the reproductive system: In adult stage, expressed in gonad sheath, uterus, vulval muscle. In developing larva stage, expressed in vulva. Neuronal expression of inx-9 appears around three-fold stage. The rectal gland expresses inx-9 during early larval stages. inx-9 is expressed in adult hermaphrodite sex muscles. inx-9 was expressed at high levels in arcade cells starting around two-fold stage continuing throughout development and adulthood. Primary Identifier  Expr8677
Remark  Picture: Fig 3.
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34 Anatomy Terms

Definition Name Synonym Primary Identifier
female genital. vulva   WBbt:0006748
muscle associated with hermaphrodite vulva. vulval muscle   WBbt:0005821
The organ in which the eggs are developed and protected until laid. uterus   WBbt:0006760
  rectal gland cell   WBbt:0005799
five pairs of thin gonadal sheath cells form a single layer covering the germ line component of each arm, each pair occupying a stereotyped position along the gonad proximal-distal axis. gonadal sheath cell   WBbt:0005828
seventh pharyngeal muscle cell layer pm7 m7 WBbt:0003721
Neuron class of one asymmetric interneuron, projects along ventral cord to ring, sends process into tail spike. PVR lineage name: Caappv WBbt:0004072
Receives a few synapses in the ring, has a posteriorly directed process that runs sublaterally SIBVR lineage name: ABprpapaapp WBbt:0004977
Receives a few synapses in the ring, has a posteriorly directed process that runs sublaterally SIBDL lineage name: ABplppaaaaa WBbt:0004981
Receives a few synapses in the ring, has a posteriorly directed process that runs sublaterally SIBDR lineage name: ABprppaaaaa WBbt:0004979
Receives a few synapses in the ring, has a posteriorly directed process that runs sublaterally SIBVL lineage name: ABplpapaapp WBbt:0004978
epithelium connecting intestine and anus. rectal epithelium   WBbt:0005800
Interface between pharynx and hypodermis, form anterior part of the buccal cavity. anterior arcade cell arc ant WBbt:0005794
Interface between pharynx and hypodermis, form anterior part of the buccal cavity. posterior arcade cell arc post WBbt:0005795
third pharyngeal muscle cell layer pm3 M3 WBbt:0003740
eighth pharyngeal muscle cell layer (single cell) pm8 lineage name: MSaaapapp WBbt:0004302
fifth pharyngeal muscle cell layer pm5 M5 WBbt:0003737
fourth pharyngeal muscle cell layer pm4 M4 WBbt:0003739
sixth pharyngeal muscle cell layer pm6 m6 WBbt:0003724
Ring and ventral cord interneuron. AVKR lineage name: ABprpapapap WBbt:0003844
Ring and ventral cord interneuron. AVKL lineage name: ABplpapapap WBbt:0003845
Neuron class of one ring interneuron, cell body in dorsorectal ganglion. DVC lineage name: Caapaa WBbt:0004821
marginal cell, type 1. mc1   WBbt:0003709
second layer pharyngeal muscle cell. pm2 m2 WBbt:0003742
Neuron class of one pharyngeal interneuron, anterior sensory. I3 neuron I3 WBbt:0004742
Phasmid sheath PHshR lineage name: ABprpppapaa WBbt:0004114
Phasmid sheath PHshL lineage name: ABplpppapaa WBbt:0004116
Neuron, presynaptic in ring, ending in head URBL lineage name: ABplaapaapa WBbt:0004932
Neuron, presynaptic in ring, ending in head URBR lineage name: ABpraapaapa WBbt:0004930
Pharyngeal gland cell 1P, before fusion into g1ARP. g1P lineage name: MSaaaaapap WBbt:0004528

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002131 inx-9 ZK792.3 Caenorhabditis elegans

5 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The stage that begins when a C.elegans individual is fully-developed and has reached maturity. adult Ce WBls:0000041
  The C. elegans life stage spanning 620-800min(hatch) after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. A stage after elongation is over. The last stage of embryogenesis. Also called pre-hatched embryo, late embryo or morphogenetic embryo. fully-elongated embryo Ce WBls:0000021
  A developmental life stage of the nematode Caenorhabditis elegans that occurs from egg hatching until adulthood. larva Ce WBls:0000023
  The C. elegans life stage spanning 520-620min after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. The shape of embryo is elongated and tripple fold. A stage between 2-fold embryo and fully-elongated embryo. Also called pretzel embryo or pretzel stage. 3-fold embryo Ce WBls:0000020
  The C. elegans life stage spanning 460-520min after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. The shape of embryo is elongated and double fold. A stage between 1.5-fold embryo and 3-fold embryo. 2-fold embryo Ce WBls:0000019