Genomics
18 Transcripts
Other
8 CDSs
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| CDS:T28F12.2a | T28F12.2a |
1695
 |
V: 4497467-4497589 |
| CDS:T28F12.2f | T28F12.2f |
1683
|
V: 4497467-4497589 |
| CDS:T28F12.2b | T28F12.2b |
1584
|
V: 4499796-4499807 |
| CDS:T28F12.2e | T28F12.2e |
1572
|
V: 4499796-4499807 |
| CDS:T28F12.2g | T28F12.2g |
1473
|
V: 4501318-4501400 |
| CDS:T28F12.2d | T28F12.2d |
336
|
V: 4509913-4510148 |
| CDS:T28F12.2c | T28F12.2c |
462
|
V: 4505814-4505905 |
| CDS:T28F12.2h | T28F12.2h |
1461
|
V: 4501318-4501400 |
81 RNAi Result
240 Allele
| Public Name |
|---|
| gk963301 |
| gk963591 |
| gk963553 |
| gk964259 |
| gk964351 |
| gk963850 |
| WBVar01588039 |
| WBVar01588040 |
| s472 |
| otn12381 |
| WBVar01861082 |
| WBVar01973064 |
| WBVar01973065 |
| t2012 |
| gk604385 |
| gk394122 |
| gk328570 |
| gk764582 |
| gk574030 |
| gk788604 |
| gk433093 |
| gk776573 |
| gk689364 |
| gk392028 |
| gk910834 |
| gk879236 |
| gk848957 |
| gk828000 |
| gk833548 |
| gk364002 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00006796 | 4497461 | 4511449 | 1 |
4 Data Sets
| Name | URL |
|---|---|
| WormBaseAcedbConverter | |
| GO Annotation data set | |
| C. elegans genomic annotations (GFF3 Gene) | |
| Panther orthologue and paralogue predictions |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrV_4511450..4513032 | 1583 | V: 4511450-4513032 | Caenorhabditis elegans |
162 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Transcripts that showed significantly increased expression in L1 neural cells comparing to in adult neural cells. | DESeq2 (v1.18.1) fold change > 2, P-adj<0.05, using BenjaminiHochberg correction. | WBPaper00060811:L1_vs_adult_upregulated_neural | |
| Transcripts expressed in neuronal cells, by analyzingfluorescence-activated cell sorted (FACS) neurons. | DESeq. False discovry rate (FDR) < 0.1. | WBPaper00048988:neuron_expressed | |
| adult vs dauer larva | Transcripts that showed differential expression in adult vs dauer lava in N2 animals at 20C. | N.A. | WBPaper00050488:adult_vs_dauer_regulated_N2_20C |
| mRNAs that showed decreased expression in 1 cell mebryo comparing to in oocyte, according to RNAseq analysis. | Gaussian error propagation. As cutoff for the up-regulated genes authors used log2 fold change > 1 and P < 0.05 and as cutoff for the down-regulated genes authors used log2 fold change < -1 and P < 0.05. | WBPaper00045420:fertilization_downregulated_transcript | |
| Osmotic stress | Transcripts that showed significantly altered expression with 500 mM salt (NaCl) vs 100 mM salt when food was present | DESeq(version 1.10.1), FDR < 0.05. | WBPaper00050726:OsmoticStress_regulated_Food |
| Transcripts that showed significantly increased expression after animals were treated with 100uM Rapamycin and 50mM Metformin from day 1 to day 3 adult hermaphradite. | DESeq2(v1.14.1), fold change > 2, p-value < 0.05 | WBPaper00055354:Rapamycin-Metformin_upregulated | |
| Transcripts expressed in the epithelial tissues surrounding the pharynx that includes the arcade and intestinal valve (AIV) cells, according to PAT-Seq analysis using Pbath-15-GFP-3XFLAG mRNA tagging. | Cufflinks FPKM value >=1. | WBPaper00050990:arcade_intestinal-valve_expressed | |
| Transcripts expressed in body muscle, according to PAT-Seq analysis using Pmyo-3-GFP-3XFLAG mRNA tagging. | Cufflinks FPKM value >=1. | WBPaper00050990:body-muscle_expressed | |
| Transcripts expressed in GABAergic neuron, according to PAT-Seq analysis using Punc-47-GFP-3XFLAG mRNA tagging. | Cufflinks FPKM value >=1. | WBPaper00050990:GABAergic-neuron_expressed | |
| Transcripts expressed in hypodermis, according to PAT-Seq analysis using Pdpy-7-GFP-3XFLAG mRNA tagging. | Cufflinks FPKM value >=1. | WBPaper00050990:hypodermis_expressed | |
| Transcripts expressed in intestine, according to PAT-Seq analysis using Pges-1-GFP-3XFLAG mRNA tagging. | Cufflinks FPKM value >=1. | WBPaper00050990:intestine_expressed | |
| Maternal class (M): genes that are called present in at least one of the three PC6 replicates. | A modified Welch F statistic was used for ANOVA. For each gene, regressed error estimates were substituted for observed error estimates. The substitution is justified by the lack of consistency among the most and least variable genes at each time point. Regressed error estimates were abundance-dependent pooled error estimates that represented a median error estimate from a window of genes of similar abundance to the gene of interest. A randomization test was used to compute the probability Pg of the observed F statistic for gene g under the null hypothesis that developmental time had no effect on expression. P-values were not corrected for multiple testing. | [cgc5767]:expression_class_M | |
| Transcripts expressed in NMDA neuron, according to PAT-Seq analysis using Pnmr-1-GFP-3XFLAG mRNA tagging. | Cufflinks FPKM value >=1. | WBPaper00050990:NMDA-neuron_expressed | |
| Transcripts expressed in pharynx, according to PAT-Seq analysis using Pmyo-2-GFP-3XFLAG mRNA tagging. | Cufflinks FPKM value >=1. | WBPaper00050990:pharynx_expressed | |
| Transcripts expressed in seam cells, according to PAT-Seq analysis using Pgrd-10-GFP-3XFLAG mRNA tagging. | Cufflinks FPKM value >=1. | WBPaper00050990:seam_expressed | |
| Genes with expression level regulated by genotype (N2 vs CB4856) at old adults stage (214 hours at 24 centigrade). | For model 2, authors used 100 permutations to estimate the FDR threshold. Per permutation, genotypes and ages were independently randomly distributed, keeping the among-gene structure intact. Then for each spot (23,232) on the array, model 2 was tested. The obtained P-values were used to estimate a threshold for each of the explanatory factors. Authors also used a genome-wide threshold of -log10 P-value = 2, which resembles an FDR of 0.072 and 0.060 for marker and the interaction age-marker for the developing worms and FDR of 0.050 and 0.065 for marker and age-marker for the aging worms. For the physiological age effect, authors used a log10 P-value = 8 in developing worms (0.012 FDR) and -log10 P-value = 6 (0.032 FDR). | WBPaper00040858:eQTL_regulated_aging | |
| Genes with expression level regulated by genotype (N2 vs CB4856) at Late reproduction stage (96 hours at 24 centigrade). | Authors permuted transcript values and used a genome-wide threshold of log10 P-value = 2, which resembles a false discovery rate (FDR) of 0.0118. | WBPaper00040858:eQTL_regulated_reproductive | |
| Bacteria infection: Photorhabdus luminescens | Genes down-regulated in animals infected with Photorhabdus luminescens compared to the E. coli OP50 control after 24h of infection. | MAANOVA and BRB-Array-Tools. | WBPaper00030985:Photorhabdus_luminescens_downregulated |
| Strictly maternal class (SM): genes that are the subset of maternal genes that are not also classified as embryonic. | A modified Welch F statistic was used for ANOVA. For each gene, regressed error estimates were substituted for observed error estimates. The substitution is justified by the lack of consistency among the most and least variable genes at each time point. Regressed error estimates were abundance-dependent pooled error estimates that represented a median error estimate from a window of genes of similar abundance to the gene of interest. A randomization test was used to compute the probability Pg of the observed F statistic for gene g under the null hypothesis that developmental time had no effect on expression. P-values were not corrected for multiple testing. | [cgc5767]:expression_class_SM | |
| Bacteria infection: Bacillus thuringiensis | mRNAs that showed significantly decreased expression after pathogenic bacteria Bacillus thuringiensis infections comparing to non pathogenic BT (BT247(1 to 10 mix) vs BT407 6h), according to RNAseq. | Cuffdiff, ajusted p-value < 0.01. | WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h |
| Bacteria infection: Bacillus thuringiensis | mRNAs that showed significantly decreased expression after pathogenic bacteria Bacillus thuringiensis infections comparing to non pathogenic BT (BT247(1 to 10 mix) vs BT407 12h), according to RNAseq. | Cuffdiff, ajusted p-value < 0.01. | WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h |
| Bacteria infection: Bacillus thuringiensis | mRNAs that showed significantly decreased expression after pathogenic bacteria Bacillus thuringiensis infections comparing to non pathogenic BT (BT247(1 to 2 mix) vs BT407 6h), according to RNAseq. | Cuffdiff, ajusted p-value < 0.01. | WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h |
| Transcripts that showed significantly increased expression in sin-3(tm1276) comparing to in N2. | DESeq2, fold change > 2, p-value < 0.01. | WBPaper00061203:sin-3(tm1276)_upregulated | |
| Transcripts that showed significantly increased expression in aak-1(tm1944);aak-2(ok524) animals comparing to in N2. | DEseq 1.18.0, adjusted p-value < 0.05. | WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated | |
| Transcripts that showed significantly decreased expression in sin-3(tm1276) comparing to in N2 at early embryo when there were only 3 -5 eggs in the adult. | DESeq2, fold change > 2, adjusted p-value < 0.01 | WBPaper00058598:sin-3(tm1276)_downregulated | |
| Transcripts detected in body muscle nuclei according to a nuclear FACS-based strategy. | Cufflinks | WBPaper00065120:body-muscle-transcriptome | |
| Gamma irradiation 100 mGY per hour for 72 hours since L1 larva. | Transcripts that showed significantly increased expression after exposure to 100mGy per hour gamma irradiation from L1 to day 1 adult hermaphrodite stage. | DESeq2, FDR <= 0.05, log2 fold change >= 0.3 or <= -0.3. | WBPaper00058958:100mGy-irradiation-72h_upregulated |
| Genes that showed expression levels higher than the corresponding reference sample (L2 all cell reference). | A Mann-Whitney U test with an empirical background model and FDR correction for multiple testing was used to detect expressed transcripts (Benjamini and Hochberg 1995). Genes and TARs with an FDR <= 0.05 were reported as expressed above background. Authors detected differentially expressed transcripts using a method based on linear models. Genes and TARs were called differentially expressed if the FDR was <= 0.05 and the fold change (FC) >= 2.0. To more strictly correct for potential false-positives resulting from multiple sample comparisons, authors divided individual FDR estimates by the number of samplesor sample comparisons, respectively. This resulted in an adjusted FDR of 1.3 * 0.0001 for expression above background and of 7.4 * 0.0001 for differential expression. Authors called genes selectively enriched in a given tissue if they met the following requirements: (1) enriched expression in a given tissue (FDR <= 0.05 and FC >= 2.0), (2) fold change versus reference among the upper 40% of the positive FC range observed for this gene across all tissues, and (3) fold-change entropy among the lower 40% of the distribution observed for all genes. | WBPaper00037950:A-class-motor-neurons_L2-larva_expressed | |
| Genes that showed expression levels higher than the corresponding reference sample (L2 all cell reference). | A Mann-Whitney U test with an empirical background model and FDR correction for multiple testing was used to detect expressed transcripts (Benjamini and Hochberg 1995). Genes and TARs with an FDR <= 0.05 were reported as expressed above background. Authors detected differentially expressed transcripts using a method based on linear models. Genes and TARs were called differentially expressed if the FDR was <= 0.05 and the fold change (FC) >= 2.0. To more strictly correct for potential false-positives resulting from multiple sample comparisons, authors divided individual FDR estimates by the number of samplesor sample comparisons, respectively. This resulted in an adjusted FDR of 1.3 * 0.0001 for expression above background and of 7.4 * 0.0001 for differential expression. Authors called genes selectively enriched in a given tissue if they met the following requirements: (1) enriched expression in a given tissue (FDR <= 0.05 and FC >= 2.0), (2) fold change versus reference among the upper 40% of the positive FC range observed for this gene across all tissues, and (3) fold-change entropy among the lower 40% of the distribution observed for all genes. | WBPaper00037950:all-neurons_L2-larva_expressed | |
| Growth temperature | Transcripts that are significantly downregulated at 15C compared to both 25C and 20C, with no statistical difference between 25C and 20C, in worms feeding B. subtilis PY79. | DESeq2 and EdgeR, adjusted p-value < 0.05. | WBPaper00053814:15C_downregulated_PY79 |
34 Expression Patterns
| Remark | Reporter Gene | Primary Identifier | Pattern | Subcellular Localization |
|---|---|---|---|---|
| Expr4581 | Expressed in neuronal and metabolic tissues. | |||
| Expr9793 | GFP expression was observed in the M lineage from L1, and continued through development of the sex muscles. GFP was also observed in the vulval precursor cells and and the developing vulva from L3 to adulthood. | |||
| Expr9837 | Nuclear-localized GFP was seen from the comma-stage embryo through to the mature adult in a variety of cell types. NB. Some variation was found between transgenic lines generated for the same reporter gene fusion clone. GFP was observed in many cells in embryos and from L1 to L3. Neurons in head, tail and ventral nerve cord expressed GFP, DVA particularly strongly in some larvae and adults. Muscle cell nuclei throughout the body contained GFP, with higher levels in the M lineage from the L1. In some L1s, L2s and L3s, GFP expression was observed in the P lineage although this was variable presumably due to mosaicism of the transgenic array. GFP was also seen in the developing vulva and reproductive muscles. Intestinal expression of GFP was present in L3s, L4s and adults, but inconsistently. | |||
| Expr9845 | Broad GFP expression was observed from early embryogenesis through to the mature adult. Expression pattern components included neurons in head, tail and ventral nerve cord, cells in the head that are probably muscle cells, vulval and uterine muscle, and in the body wall, in the hypodermis and possibly muscle. Some weak intestinal GFP expression was seen occasionally but inconsistently. | |||
| Expr10771 | Strong UNC-62:GFP expression was observed in a variety of tissues in the hermaphrodite, including the vulval precursor cells, the ventral cord motorneurons and other neurons, the hypodermis, and the intestine. Expression in neurons and hypodermis is visible throughout development and into adulthood; expression in vulval precursor cells is only seen when that lineage emerges in the L3 and L4 stages (data not shown). For the intestine, strong expression was observed beginning in the L3 stage and continuing into adulthood. | |||
| Expr10773 | UNC-62(7b) was expressed in neurons, the ventral nerve cord, vulval precursor cells, and hypodermis beginning in embryos and continuing through adulthood. | |||
| Clone: pUL#JRH/AE8 | Expr7691 | 3 components. 1. Vulval precursor cells, becoming stronger first in P6p and then in P5p and P7p, retained in P3p,P4p and P8p. Oddly always appears in 3 cells anterior of P5p, not 2, as if P2p is also expressing. 2. 4 cells around body in posterior of L1 larva that divide to give 8 cells and then expression lost. May be muscle cells. 3. Half of uterus closest to vulva. Some cells expressing early in somatic gonad may be precursors. Some possible background in anterior body wall muscle. | ||
| Expr15644 | ||||
| Expr12587 | The Meis-class TALE cofactor unc-62 was expressed in ALM, but not PLM. | |||
| Picture: Fig 4. | Expr8784 | unc-62::gfp expression was first detectable during mid-embryogenesis in a subset of cells that include AB lineage derivatives. In newly hatched L1 larvae, unc-62::gfp was observed in multiple cell types including the M mesoblast, as well as a few neurons in the head and tail, and dorsal and ventral hypodermis. In the L1 larva, unc-62::gfp expression continued throughout the M lineage in all dividing M descendants. The GFP signal was transiently detectable in M-derived CCs and BWMs before they terminally differentiate, but remained detectable in the SMs and throughout the SM lineage, including the differentiated vulval muscles. Outside of the M lineage, the neuronal expression in the head and tail was retained throughout postembryonic development, while hypodermal expression appeared more variable. unc-62::gfp expression was also observed in a subset of ventral nerve cord (VNC) cells after the L2 stage and in the P lineage with initial faint GFP expression in P3.p, P4.p and P5.p in L1 animals, which expanded to P6.p, P7.p and P8.p cells at the L2 stage. Upon vulval induction, L3 and L4 larvae displayed strong GFP expression in P5.p, P6.p and P7.p and their descendants, but expression in P3.p, P4.p and P8.p and their descendants became weaker and eventually undetectable by mid-L4 stage. unc-62::gfp expression persisted in all differentiated vulval cells after vulval morphogenesis in adults. | ||
| Expr2036031 | Single cell embryonic expression. Only cell types with an expression fraction of greater 0.2 of the maximum expressed fraction are labeled (Full data can be downloaded from http://caltech.wormbase.org/pub/wormbase/datasets-published/packer2019/). The colors represent the broad cell class to which the cell type has been assigned. The size of the point is proportional to the log2 of the numbers of cells in the dataset of that cell type. Interactive visualizations are available as a web app (https://cello.shinyapps.io/celegans/) and can also be installed as an R package (https://github.com/qinzhu/VisCello.celegans). | |||
| Picture: Supplemental Figure 3. | Expr8583 | unc-62/Meis are broadly expressed in all nuclei in the ventral nerve cord, including the VC neurons. | ||
| Expr1032866 | Tiling arrays expression graphs | |||
| Expr9777 | Neuronal expression of GFP was seen in DVA, the ventral nerve cord and other neurons in the head and tail. GFP was also expressed in the developing vulva and hypodermis and faintly in the intestine. | |||
| Expr9779 | Nuclear-localized GFP was observed in the intestine, the developing vulva and the DVA neuron throughout development. There was also weaker GFP expression in other nuclei in the head. The GFP expression pattern looks very similar, if not identical, to that observed for UL3705, which was generated by the same strategy as for UL3573 but using a different starting fosmid. | |||
| Expr9786 | GFP was observed from comma stage embryo to adult. However the expression pattern demonstrated considerable differences between independent transgenic strains generated with the same reporter gene fusion fosmid clone. All showed bright fluorescence in several neurons in the nerve ring and in the DVA neuron, revealing the DVA axon in some individuals. GFP was seen in the intestine in some L3s, L4s and adults but this fluorescence is weaker than other components and inconsistent between and within individuals. GFP was also observed in vulval muscles in some L4s. | |||
| Expr9787 | GFP was seen in 100 to 200 cell embryos onwards, in many nuclei. GFP expression in the DVA neuron was apparent from the L1 to the mature adult. Intestinal expression of GFP was seen from the L1 or L2 to adult but the level of GFP in this tissue decreased in more mature adults. Many neurons in the head, and some in tail, also expressed GFP. GFP expression was present throughout the ventral nerve cord in the L1 and L2. The M cell expressed GFP in the L1 and and this continued into the resulting sex muscle precursors in later stages. GFP was also observed in body wall muscle. GFP expression in UL3704 was much fainter than in UL3705 and was only visible in DVA in most individuals. | |||
| Expr9797 | GFP expression was observed from the post-comma stage embryo to the mature adult. Very strong GFP expression was seen in the DVA neuron and 1 to 3 neurons in the head throughout development, including the adult. GFP seen in some other tail neurons in some individuals and in the ventral nerve cord, was particularly apparent in L3s and L4s. GFP was observed in the intestine from the L2 or L3 stage onwards. GFP was also seen in the developing hermaphrodite reproductive system, possibly in the uterus and vulva, and in adult vulval muscles. Diffuse fluorescence (presumably due to localization in the cytoplasm and nucleus) was apparent in the body wall, in a row of cells along both sides which increased in number with age and were presumably seam cells. GFP fluorescence was fainter in UL3931. The GFP expression pattern looks very similar, if not identical, to that observed for UL4083, which was generated by the same strategy as for UL3935 but using a different starting fosmid. | |||
| Expr9818 | GFP was observed in the M cell in the L1 and in all Mv cell daughters giving rise to the sex muscles in the L4. The GFP was occasionally maintained in vulval muscle cell nuclei into the adult. GFP expression was also seen in muscles in the head, in vulval and uterine precursors in L2s and L3s, and in several neurons in the head and ventral nerve cord from L2 to adult. There was also GFP expression in the intestine but this was inconsistent. (The images are of strain UL4037 which exhibited broader and stronger expression than UL3567, which had very weak GFP expression). | |||
| Expr9819 | Broad GFP expression occurred in young larvae including possibly all ventral nerve cord neurons from the L1 to the L3. GFP expression was also seen in body wall muscles throughout development, as well as in the sex muscles and the developing vulva. Intestinal expression was observed from the L3 onwards but inconsistently within and between individuals. | |||
| Expr9832 | GFP expression was observed from post-comma stage embryo to mature adult. Very strong expression was observed in the DVA neuron, and 1 to 3 neurons in the head, throughout development including the adult. GFP expression was seen in some additional tail neurons in a few individuals. Intestinal expression of GFP was observed from L3 onwards but to different levels in different intestinal cells with variation between individuals. There could have been weak GFP expression in the M cell and P lineages, but the fluorescence was diffuse rather than restricted to the nuclei, and possibly also in ventral nerve cord neurons in the adult. GFP expression was even fainter in UL4043. | |||
| Expr10772 | UNC-62(7a) was predominantly expressed in the intestine starting in L3 and continuing through adulthood. | |||
| Expr2301 | Further evidence for differential accumulation was obtained using quantitative real-time PCR analysis (QPCR) with appropriate transcript-specific primers The levels of the rare 7a transcripts increase over 100-fold from early embryos to adulthood. In addition, the QPCR results show that the levels of 7b mRNAs (unclear from the RNA blot because of non-uniform loading) are approximately the same in adult soma and complete adults, indicating that both 7b and 7a mRNAs are present in adult soma. The lower relative levels of 7a mRNAs in complete adults compared with adult soma raises the possibility that 7a mRNAs are not present in the hermaphrodite germline. RNA blot analysis of stage-specific total RNA with transcript-specific probes showed different accumulation patterns for the four unc-62 mRNAs. The 1a-containing mRNAs were more abundant than the 1b-containing mRNAs, but their temporal patterns of accumulation appeared similar. Both were present in adult germline, pregastrulation embryos, later embryos and adult soma. The 7a signals were too weak to assess relative abundances at different stages. The 7b-containing mRNAs appeared much more abundant than the 7a RNAs in both embryos and adults. | |||
| Expr11181 | unc-62 translational reporter was clearly observed in seam cell nuclei.unc-62::cfp is equally expressed in anterior and posterior daughter nuclei following asymmetric division. | |||
| Expr9778 | GFP was expressed in the DVA neuron, the ventral nerve cord and other neurons in the head and tail. Nuclear-localized GFP was also present in the developing vulva, the hypodermis and body wall muscle. The GFP expression pattern looks very similar, if not identical, to that observed for UL4038, which was generated by the same strategy as for UL3572 but using a different starting fosmid. | |||
| Expr9811 | GFP expression was observed from late embryogenesis to the adult. From L1 to adult, GFP was seen in several neuronal cell bodies in the head, tail and ventral nerve cord, and in cells in the body wall, in the hypodermis and possibly body wall muscle. In the L1, GFP was observed in what may be the M lineage. In L3s and L4s, GFP was present in developing sex muscles and other cells of reproductive system, and some of this expression continues into the adult. | |||
| Expr9825 | GFP expression was observed from late embryogenesis through to the adult, in the body wall, in the hypodermis and possibly some muscle cells. GFP was present in many neurons in the head, tail and ventral nerve cord. In the L4, GFP was seen in the developing vulva and uterus, and possibly in vulval muscle, sometimes continuing into the adult. | |||
| Expr9839 | Very broad GFP expression was observed from early embryo to adult, although the fluorescence was weaker and less widespread in adults. GFP was seen in many neurons in the head, tail and ventral nerve cord throughout the larval stages, with fewer showing fluorescence in the adult. GFP was seen in the hypodermis, and possibly body wall muscle, through the length of the body. GFP was also present in the developing vulva and uterus. | |||
| Expr9840 | GFP expression was observed in the embryo and throughout development into the adult, in many head and ventral nerve cord neurons, in the hypodermis and possibly body wall muscle. GFP expression in the developing vulva was seen from the L3 stage. | |||
| Expr12658 | unc-62 was not detected in the AC before or during the time of invasion, but was expressed in the underlying vulval cells (VPCs). |
36 GO Annotation
| Annotation Extension | Qualifier |
|---|---|
| enables | |
| enables | |
| enables | |
| enables | |
| enables | |
| enables | |
| acts_upstream_of_or_within | |
| enables | |
| enables | |
| enables | |
| enables | |
| enables | |
| enables | |
| enables | |
| enables | |
| involved_in | |
| involved_in | |
| involved_in | |
| involved_in | |
| involved_in | |
| involved_in | |
| involved_in | |
| enables | |
| located_in | |
| involved_in | |
| involved_in | |
| involved_in | |
| involved_in | |
| involved_in | |
| involved_in |
19 Homologues
| Type |
|---|
| least diverged orthologue |
| least diverged orthologue |
| least diverged orthologue |
| orthologue |
| orthologue |
| orthologue |
| orthologue |
| orthologue |
| orthologue |
| orthologue |
| orthologue |
| orthologue |
| orthologue |
| orthologue |
| least diverged orthologue |
| orthologue |
| least diverged orthologue |
| orthologue |
| orthologue |
36 Ontology Annotations
| Annotation Extension | Qualifier |
|---|---|
| enables | |
| enables | |
| enables | |
| enables | |
| enables | |
| enables | |
| acts_upstream_of_or_within | |
| enables | |
| enables | |
| enables | |
| enables | |
| enables | |
| enables | |
| enables | |
| enables | |
| involved_in | |
| involved_in | |
| involved_in | |
| involved_in | |
| involved_in | |
| involved_in | |
| involved_in | |
| enables | |
| located_in | |
| involved_in | |
| involved_in | |
| involved_in | |
| involved_in | |
| involved_in | |
| involved_in |