WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Pattern :

Pattern  Arcade cells are seen to express inx-13 at high levels starting around two-fold stage continuing throughout development and adulthood. inx-13 is expressed in the hypodermal cells of the animal in postembryonic stages. Expression in the alimentary canal: Strong and consistent expression in M1, M2. Weak or rare expression in intestine, rectal epithelial cells. Expression in the nervous system: Amsh, CEPsh, CEPso, ILsh, ILso, OLsh, OLso, Phsh, CAN, DVA, DVB, DVC, LUA, PHA, PHB, PLN, PVC, PVQ, PVR, M1, M2. Expression in the reproductive system: In adult stage, expressed in spermatheca, sp-ut valve. Primary Identifier  Expr8681
Remark  Picture: N.A.
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61 Anatomy Terms

Definition Name Synonym Primary Identifier
an accordion-like tube that contains sperm and is the site of oocyte fertilization. spermatheca   WBbt:0005319
A chain of very large cuboidal cells forming a wide central lumen in which food arrives from the posterior pharynx, is digested, and from which waste products proceed to the rectum. Intestinal rings form in groups of two and four cells surrounding the common lumen; thus the epithelium is only one cell deep at any point, with neighboring cells firmly secured to their neighbors by apical adherens junctions. These cells have very large nuclei and many large vacuoles, yolk granules, and other inclusions; the latter increase in number and electron density as the animal ages. intestine gut WBbt:0005772
A valve tissue that connects the spermatheca and the uterus of a hermaphrodite gonad. spermathecal-uterine junction sp-ut valve WBbt:0006756
Interneuron, associated with PLM PLNL lineage name: TL.pppap WBbt:0004102
Interneuron, associated with PLM PLNR lineage name: TR.pppap WBbt:0004098
Interneuron, projects along ventral cord to ring PVQL lineage name: ABplapppaaa WBbt:0004076
Interneuron, projects along ventral cord to ring PVQR lineage name: ABprapppaaa WBbt:0004074
Ventral cord interneuron, cell body in lumbar ganglion, synapses onto VB and DB motor neurons, formerly called delta. PVCR lineage name: ABprpppaapaa WBbt:0004092
Ventral cord interneuron, cell body in lumbar ganglion, synapses onto VB and DB motor neurons, formerly called delta. PVCL lineage name: ABplpppaapaa WBbt:0004094
Phasmid neurons, probably chemosensory PHAL lineage name: ABplpppaapp WBbt:0004366
Phasmid neurons, probably chemosensory PHAR lineage name: ABprpppaapp WBbt:0004365
Embryonic cell of pedigree ABplaapaapp, amphid sheath cell, left. AMshL ABplaapaapp WBbt:0003935
Embryonic cell of pedigree ABpraapaapp, amphid sheath cell, right. AMshR ABpraapaapp WBbt:0003933
Phasmid neurons, probably chemosensory PHBL lineage name: ABplapppappp WBbt:0004364
Phasmid neuron, probably chemosensory PHBR lineage name: ABprapppappp WBbt:0005659
Process runs along excretory canal, no synapses, essential for survival CANL lineage name: ABalapaaapa WBbt:0004949
Process runs along excretory canal, no synapses, essential for survival CANR lineage name: ABalappappa WBbt:0004947
Neuron class of one asymmetric interneuron, projects along ventral cord to ring, sends process into tail spike. PVR lineage name: Caappv WBbt:0004072
Neuron class of one ring interneuron, cell body in dorsorectal ganglion, has a large vesicle-filled process in ring. DVA lineage name: ABprppppapp WBbt:0004823
Neuron class of one ring interneuron, cell body in dorsorectal ganglion, inervates rectal muscles. DVB lineage name: K.p WBbt:0004822
epithelium connecting intestine and anus. rectal epithelium   WBbt:0005800
Inner labial socket ILsoDL lineage name: ABplaapaaap WBbt:0004521
Quadrant outer labial socket OLQsoDL lineage name: ABarpaaaaal WBbt:0004426
Inner labial socket ILsoDR lineage name: ABpraapaaap WBbt:0004519
Quadrant outer labial socket OLQsoDR lineage name: ABarpaaaaar WBbt:0004425
Inner labial socket ILsoL lineage name: ABalaaapall WBbt:0004518
Quadrant outer labial socket OLQsoVL lineage name: ABalppaaapp WBbt:0004424
Inner labial socket ILsoR lineage name: ABalaaapprr WBbt:0004517
Quadrant outer labial socket OLQsoVR lineage name: ABalaappapp WBbt:0004423
Inner labial socket ILsoVL lineage name: ABalppapapp WBbt:0004503

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002135 inx-13 Y8G1A.2 Caenorhabditis elegans

5 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The stage that begins when a C.elegans individual is fully-developed and has reached maturity. adult Ce WBls:0000041
  A developmental life stage of the nematode Caenorhabditis elegans that occurs from egg hatching until adulthood. larva Ce WBls:0000023
  The C. elegans life stage spanning 350-620min after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. The stage that embryo starts elongation until elongation is over. elongating embryo Ce WBls:0000015
  The C. elegans life stage spanning 460-520min after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. The shape of embryo is elongated and double fold. A stage between 1.5-fold embryo and 3-fold embryo. 2-fold embryo Ce WBls:0000019
  The C. elegans life stage spanning 520-620min after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. The shape of embryo is elongated and tripple fold. A stage between 2-fold embryo and fully-elongated embryo. Also called pretzel embryo or pretzel stage. 3-fold embryo Ce WBls:0000020