WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Pattern :

Pattern  Expression in the alimentary canal: Strong and consistent expression in pm1, pm3. Weak or rare expression in pharyngeal epithelium, pm2, pm4, pm5, pm6, pm7, pm8, intestine, rectal epithelial cells. Expression in the nervous system: ILso, AIN, AVF, AVJ, AVK, PVR, SAB. Expression in the reproductive system: In adult stage, expressed in Gonad sheath, Vulva(low), vulval muscle, uterine muscle. In developing larva stage, expressed in vulval muscle, uterine muscle. inx-8 is expressed broadly, albeit at very low levels, around two-fold stage, and its expression becomes stronger in the pharynx, nervous tissue, HMC, and GLR cells as development continues. In the reproductive system, expression of inx-8 starts during early larval stages and continues during migrations of the great granddaughters of the SM blast cell to their final locations and after the sex muscles achieve their final structures. inx-8 is expressed in the hypodermal cells of the animal in postembryonic stages. Primary Identifier  Expr8676
Remark  Picture: Fig 3.
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31 Anatomy Terms

Definition Name Synonym Primary Identifier
female genital. vulva   WBbt:0006748
muscle associated with hermaphrodite vulva. vulval muscle   WBbt:0005821
muscle lining of the uterine wall. uterine muscle   WBbt:0005342
first layer pharyngeal muscle cell. pm1 M1 WBbt:0003744
five pairs of thin gonadal sheath cells form a single layer covering the germ line component of each arm, each pair occupying a stereotyped position along the gonad proximal-distal axis. gonadal sheath cell   WBbt:0005828
seventh pharyngeal muscle cell layer pm7 m7 WBbt:0003721
Neuron class of one asymmetric interneuron, projects along ventral cord to ring, sends process into tail spike. PVR lineage name: Caappv WBbt:0004072
epithelium connecting intestine and anus. rectal epithelium   WBbt:0005800
Inner labial socket ILsoDL lineage name: ABplaapaaap WBbt:0004521
Inner labial socket ILsoDR lineage name: ABpraapaaap WBbt:0004519
Inner labial socket ILsoL lineage name: ABalaaapall WBbt:0004518
Inner labial socket ILsoR lineage name: ABalaaapprr WBbt:0004517
Inner labial socket ILsoVL lineage name: ABalppapapp WBbt:0004503
Inner labial socket ILsoVR lineage name: ABarapppapp WBbt:0004501
eighth pharyngeal muscle cell layer (single cell) pm8 lineage name: MSaaapapp WBbt:0004302
third pharyngeal muscle cell layer pm3 M3 WBbt:0003740
fifth pharyngeal muscle cell layer pm5 M5 WBbt:0003737
fourth pharyngeal muscle cell layer pm4 M4 WBbt:0003739
sixth pharyngeal muscle cell layer pm6 m6 WBbt:0003724
Ring and ventral cord interneuron. AVKL lineage name: ABplpapapap WBbt:0003845
Ring and ventral cord interneuron. AVKR lineage name: ABprpapapap WBbt:0003844
second layer pharyngeal muscle cell. pm2 m2 WBbt:0003742
Neuron, synapses like AVHL/R AVJR lineage name: ABalapppppa WBbt:0003846
Neuron, synapses like AVHL/R AVJL lineage name: ABalapapppa WBbt:0003847
Ring interneuron AINR lineage name: ABalaapaaar WBbt:0003965
Ring interneuron AINL lineage name: ABalaaaalal WBbt:0003967
Interneuron, processes in ventral cord and ring, few synapses, right side AVFR   WBbt:0005658
Interneuron, processes in ventral cord and ring, few synapses, left side AVFL   WBbt:0005657
Ring interneuron, anteriorly projecting process that runs sublaterally, synapses to anterior body muscles in L1 SABD lineage name: ABplppapaap WBbt:0004999
Ring interneuron, anteriorly projecting process that runs sublaterally, synapses to anterior body muscles in L1 SABVL lineage name: ABplppapaaaa WBbt:0004998

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002130 inx-8 ZK792.2 Caenorhabditis elegans

5 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The stage that begins when a C.elegans individual is fully-developed and has reached maturity. adult Ce WBls:0000041
  The C. elegans life stage spanning 620-800min(hatch) after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. A stage after elongation is over. The last stage of embryogenesis. Also called pre-hatched embryo, late embryo or morphogenetic embryo. fully-elongated embryo Ce WBls:0000021
  A developmental life stage of the nematode Caenorhabditis elegans that occurs from egg hatching until adulthood. larva Ce WBls:0000023
  The C. elegans life stage spanning 460-520min after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. The shape of embryo is elongated and double fold. A stage between 1.5-fold embryo and 3-fold embryo. 2-fold embryo Ce WBls:0000019
  The C. elegans life stage spanning 520-620min after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. The shape of embryo is elongated and tripple fold. A stage between 2-fold embryo and fully-elongated embryo. Also called pretzel embryo or pretzel stage. 3-fold embryo Ce WBls:0000020