WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  scVI 0.6.0 Description  Single-cell RNA-Seq cell group 30_1 expressed in hypodermis.
Primary Identifier  WBPaper00065841:30_1
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13 Anatomy Terms

Definition Name Synonym Primary Identifier
Epidermal layer. hypodermis epidermis WBbt:0005733
Tail ventral hypodermis, 8th hypodermis cell hyp8   WBbt:0004381
Cylindrical hypodermal syncytium in head hyp2 lineage name: ABalpaapppp WBbt:0004692
Tail dorsal hypodermis hyp11 lineage name: Cpappv WBbt:0004377
Preanal hypodermis hyp12 lineage name: P12.pa WBbt:0004376
adult vulval toroid cell, C, formed by fusion of precursors of lineage names P5.ppal, P5.ppar, P7.papl and P7.papr. vulC   WBbt:0006765
Rectal cell, postembryonic blast cell in male B cell lineage name: ABprppppapa WBbt:0003825
Quadrant outer labial sheath OLQshDL lineage name: ABarpaaaapa WBbt:0004430
cylindrical hypodermal syncytium in the head, including hyp1-hyp6 anterior hypodermis head hypodermis WBbt:0005373
Rectal cell at hatching, becomes PDA in hermaphrodite, postembryonic blast cell in male Y cell lineage name: ABprpppaaaa WBbt:0004578
These cells include: B, F, Y, U, K' and K. All rectal epithelial cells contain secretory membrane stacks along this region facing the lumenal cuticle and produce some portion of the cuticular lining of the rectum. These are interfacial cells that connect the alimentary system to the main body syncytium. rectal epithelial cell rectal epithelium WBbt:0008182
hypodermis making up the tail. tail hypodermis   WBbt:0006978
    WBbt:0004799,WBbt:0004942

199 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000083 adt-2 F08C6.1 Caenorhabditis elegans
WBGene00000240 pah-1 K08F8.4 Caenorhabditis elegans
WBGene00000273 brp-1 Y79H2A.1 Caenorhabditis elegans
WBGene00000395 cdh-3 ZK112.7 Caenorhabditis elegans
WBGene00000401 cdh-9 F59C12.1 Caenorhabditis elegans
WBGene00000431 ceh-6 K02B12.1 Caenorhabditis elegans
WBGene00000493 che-14 F56H1.1 Caenorhabditis elegans
WBGene00000555 cnc-1 R09B5.2 Caenorhabditis elegans
WBGene00000594 col-3 T28C6.6 Caenorhabditis elegans
WBGene00000602 col-13 F15H10.2 Caenorhabditis elegans
WBGene00000611 col-34 F36A4.10 Caenorhabditis elegans
WBGene00000692 col-118 T11B7.3 Caenorhabditis elegans
WBGene00000699 col-125 C29F4.1 Caenorhabditis elegans
WBGene00000723 col-150 B0024.2 Caenorhabditis elegans
WBGene00000728 col-155 F55C10.3 Caenorhabditis elegans
WBGene00000739 col-166 T07H6.3 Caenorhabditis elegans
WBGene00000969 dhs-5 F56D1.5 Caenorhabditis elegans
WBGene00001068 dpy-6 F16F9.2 Caenorhabditis elegans
WBGene00001174 egl-5 C08C3.1 Caenorhabditis elegans
WBGene00001188 egl-20 W08D2.1 Caenorhabditis elegans
WBGene00001820 ham-1 F53B2.6 Caenorhabditis elegans
WBGene00002050 ifa-1 F38B2.1 Caenorhabditis elegans
WBGene00002053 ifb-1 F10C1.2 Caenorhabditis elegans
WBGene00002134 inx-12 ZK770.3 Caenorhabditis elegans
WBGene00002135 inx-13 Y8G1A.2 Caenorhabditis elegans
WBGene00002173 itr-1 F33D4.2 Caenorhabditis elegans
WBGene00002269 lec-6 Y55B1AR.1 Caenorhabditis elegans
WBGene00002271 lec-8 R07B1.10 Caenorhabditis elegans
WBGene00002915 let-805 H19M22.2 Caenorhabditis elegans
WBGene00003029 lin-44 E01A2.3 Caenorhabditis elegans

6 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064
  At 20 Centigrade: 72-96 hours after L4-adult molt. 6-7 days after first cleavage. 3-days post-L4 adult hermaphrodite Ce WBls:0000066
  At 20 Centigrade: 5-6 days after L4-adult molt. 8-9 days after first cleavage. 5-days post-L4 adult hermaphrodite Ce WBls:0000068
  At 20 Centigrade: 8-9 days after L4-adult molt. 11-12 days after first cleavage. 8-days post-L4 adult hermaphrodite Ce WBls:0000672
  At 20 Centigrade: 15-16 days after L4-adult molt. 18-19 days after first cleavage. 15-days post-L4 adult hermaphrodite Ce WBls:0000675
  At 20 Centigrade: 11-12 days after L4-adult molt. 14-15 days after first cleavage. 11-days post-L4 adult hermaphrodite Ce WBls:0000797

0 Processes

0 Regulated By Gene

0 Regulated By Molecule