WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Pattern :

Pattern  Rescued transgenic animals showed NPR-1::GFP fluorescence predominantly in the nervous system. The NPR-1::GFP-expressing cells in the head were identified as sensory neurons AQR, ASE, ASG, ASH (L4/adult stages only), URX, IL2L/R and OLQ (with its socket and sheath cells), the interneurons AUA and SAAD, the motor neurons RMG and SMBD, and the pharyngeal neuron M3. In the ventral nerve cord, expression was observed in the GABA-containing VD and DD motoneurons. In the tail, expression was seen in the sensory neurons PQR, PHA and PHB. The interneurons RIV, RIG and SDQ was also identified as expressing NPR-1::GFP. For most neurons, expression was seen throughout post-embryonic life, usually in both partners of bilaterally symmetrical neuron pairs. NPR-1::GFP fluorescence was also seen in a muscle in the terminal bulb of the pharynx, and sometimes in the excretory duct cell and excretory canal. Primary Identifier  Expr2257
Subcellular Localization  NPR-1::GFP fluorescence was visible on neuron cell bodies, axons and dendrites.
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43 Anatomy Terms

Definition Name Synonym Primary Identifier
type of cells that make up muscle layers in the pharynx. pharyngeal muscle cell   WBbt:0005451
Pharyngeal sensory-motorneurons m3R lineage name: ABaraappppp WBbt:0004469
Ring interneuron URXL lineage name: ABplaaaaappp WBbt:0004928
Ring interneuron URXR lineage name: ABarpapaappp WBbt:0004926
Neuron class of one sensory neuron, basal body, not part of a sensillum, projects into preanal gangion. PQR lineage name: QL.ap WBbt:0004096
Pharyngeal sensory-motorneurons m3L lineage name: ABaraapappp WBbt:0004471
Neuron class of six motoneurons, with cell bodies in the ventral cord, which innervate dorsal muscles. Each cell has a short, posteriorly directed and a longer, anteriorly directed process emanating from its cell body. The anterior process has a branch, which leaves the ventral cord as a commissure and runs round to the dorsal cord. DD neuron   WBbt:0005270
Neuron class of thirteen motoneurons, with cell bodies in the ventral cord, which innervate ventral muscles. Each cell has an anteriorly directed process emanating from its cell body. VD neuron   WBbt:0005303
one member of Amphid neurons, single ciliated endings, probably chemo-sensory; project into ring via commissure from ventral ganglion, make diverse synaptic connections in ring neuropil ASEL lineage name: ABalppppppaa WBbt:0003904
one member of Amphid neurons, single ciliated endings, probably chemo-sensory; project into ring via commissure from ventral ganglion, make diverse synaptic connections in ring neuropil ASER lineage name: ABpraaapppaa WBbt:0003903
one member of Amphid neurons, single ciliated endings, probably chemo-sensory; project into ring via commissure from ventral ganglion, make diverse synaptic connections in ring neuropil ASGL lineage name: ABplaapapap WBbt:0003892
one member of Amphid neurons, single ciliated endings, probably chemo-sensory; project into ring via commissure from ventral ganglion, make diverse synaptic connections in ring neuropil ASGR lineage name: ABpraapapap WBbt:0003891
H-shaped cell associated with the excretory system, largest cell in C. elegans. excretory cell excretory canal cell WBbt:0005812
Four processes (canals) of the excretory canal cell each contain a central collecting lumen which feeds to a central lumenal canal in the cell body; the central canal forms a specialized membrane to release fluids into the excretory duct. These five canals form a continuous H-shaped channel which extends almost the full length of the body, generally in contact with the lateral hypodermis and the pseudocoelom. excretory canal canal WBbt:0005775
The extracellular sinus formed by the excretory duct and pore cells. Excretory duct   WBbt:0005777
one member of Amphid neurons, single ciliated endings, probably chemo-sensory; project into ring via commissure from ventral ganglion, make diverse synaptic connections in ring neuropil ASHL lineage name: ABplpaappaa WBbt:0003890
one member of Amphid neurons, single ciliated endings, probably chemo-sensory; project into ring via commissure from ventral ganglion, make diverse synaptic connections in ring neuropil ASHR lineage name: ABprpaappaa WBbt:0003889
Phasmid neurons, probably chemosensory PHAL lineage name: ABplpppaapp WBbt:0004366
Phasmid neurons, probably chemosensory PHAR lineage name: ABprpppaapp WBbt:0004365
Phasmid neurons, probably chemosensory PHBL lineage name: ABplapppappp WBbt:0004364
Phasmid neuron, probably chemosensory PHBR lineage name: ABprapppappp WBbt:0005659
Ant. lateral interneuron, process projects into ring SDQR lineage name: QR.pap WBbt:0004991
Ring motor neuron/interneuron, has a posteriorly direct ed process that runs sublaterally SMBDL lineage name: ABalpapapapp WBbt:0004976
Ring motor neuron/interneuron, has a posteriorly direct ed process that runs sublaterally SMBDR lineage name: ABarappapapp WBbt:0004975
Ring interneuron, anteriorly projecting process that runs sublaterally SAADL lineage name: ABalppapapa WBbt:0005007
Ring interneuron, anteriorly projecting process that runs sublaterally SAADR lineage name: ABarapppapa WBbt:0005005
Neuron class of one sensory neuron, basal body; not part of a sensillum, projects into ring. AQR lineage name: QR.ap WBbt:0003927
Quadrant outer labial neuron OLQVL lineage name: ABplpaaappaa WBbt:0004437
Quadrant outer labial neuron OLQVR lineage name: ABprpaaappaa WBbt:0004431
Quadrant outer labial neuron OLQDL lineage name: ABalapapapaa WBbt:0004439

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003807 npr-1 C39E6.6 Caenorhabditis elegans

5 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The second stage larva. At 25 Centigrade, it ranges 25.5-32.5 hours after fertilization, 11.5-18.5 hours after hatch. L2 larva Ce WBls:0000027
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024
  The stage that begins when a C.elegans individual is fully-developed and has reached maturity. adult Ce WBls:0000041
  The third stage larva. At 25 Centigrade, it ranges 32.5-40 hours after fertilization, 18.5-26 hours after hatch. L3 larva Ce WBls:0000035